PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.4G235700.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HB-other

Protein Properties

Length: 259aa MW: 29007.4 Da PI: 4.2614

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.4G235700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.4	3.2e-10	186	236	3	53
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 R++++k qle+Le+++ +++ p+ +++ + + ++L+ + + WF rR Sevir.4G235700.2.p 186 ARRRLKKVQLETLERVYLRSKRPTNTMISSIVQVTNLPRKTIVKWFEDRRE 236 6999*********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.446	181	241	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.92E-10	183	238	IPR009057	Homeodomain-like
SMART	SM00389	2.0E-4	183	245	IPR001356	Homeobox domain
CDD	cd00086	2.62E-9	184	235	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.4E-9	186	236	IPR009057	Homeodomain-like
Pfam	PF00046	8.6E-8	186	236	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002229	Biological Process	defense response to oomycetes
GO:0009414	Biological Process	response to water deprivation
GO:0009682	Biological Process	induced systemic resistance
GO:0009787	Biological Process	regulation of abscisic acid-activated signaling pathway
GO:0010118	Biological Process	stomatal movement
GO:0050832	Biological Process	defense response to fungus
GO:2000022	Biological Process	regulation of jasmonic acid mediated signaling pathway
GO:2000071	Biological Process	regulation of defense response by callose deposition
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDNDDEDGAL EALFKQLEED LANDDLSVDD DDDEISEEDM ARFEKELAEA IEDVGGVDES 60 AGDSLLSSGD YGNDEQIDRS EGPELKTWQL RRLAHALKIG RRKTSIKNLA GELGLDRALV 120 IELLRNPPPK LILMSDSLPD EAPSKPEVKE LELPGSTTID VDEVGTTEIE PQMELPVHVM 180 SAEWSARRRL KKVQLETLER VYLRSKRPTN TMISSIVQVT NLPRKTIVKW FEDRREQDGV 240 PDHRVAFKRS LSETVASS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	193	ARRRLKKVQ

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.4G235700.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965959.1	0.0	protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 isoform X2
Refseq	XP_022681414.1	0.0	protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 isoform X1
Swissprot	Q8H0V5	5e-58	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	K3XY48	0.0	K3XY48_SETIT; Uncharacterized protein
STRING	Si006856m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	2e-60	overexpressor of cationic peroxidase 3

Link Out ? help Back to Top
Phytozome	Sevir.4G235700.2.p

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]