PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G252900.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 1081aa    MW: 120242 Da    PI: 6.5862
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G252900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.98.3e-2371172199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Sevir.4G252900.3.p  71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDATWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV- 158
                         99*****************************954.4444.48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++++l+++++r+
  Sevir.4G252900.3.p 159 -RDEKQQLLLGIRRA 172
                         .5688889****997 PP
2Auxin_resp118.45.9e-39197280183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Sevir.4G252900.3.p 197 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 280
                         79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-4360200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-4163186IPR015300DNA-binding pseudobarrel domain
CDDcd100175.29E-1970162No hitNo description
PfamPF023621.0E-2071172IPR003340B3 DNA binding domain
PROSITE profilePS5086311.9771173IPR003340B3 DNA binding domain
SMARTSM010197.4E-2371173IPR003340B3 DNA binding domain
PfamPF065071.0E-33197280IPR010525Auxin response factor
PfamPF023094.6E-109451032IPR033389AUX/IAA domain
PROSITE profilePS5174528.9399471031IPR000270PB1 domain
SuperFamilySSF542771.28E-79591026No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1081 aa     Download sequence    Send to blast
MQKDVDGHVP SYPNLPSKLI CLLHNVTLHA DPETDEVYAQ MTLQPVTSYG KEALQLSELA  60
LKQPRPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IQARDLHDAT  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VVPFAKYQKA LYGNQISLGM  240
RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI  300
EPVAAPFFIC PPPFFGSKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL  360
SLVQWMNMNM QQNSSFANTA MQSEYLRSLS NPNMQNLGAA DLSRQLCLQN QILQQNSIQF  420
SSSKLPQQMQ PVNELSKATL PLNQLGMGTK LQEQTHDPSN LQRQQQSMNQ LLPLSQSQTN  480
LVQAQVLVQN QMQQQQQPPS MTQNQQPAAS QPQLLPHPQQ QQQQQQHQQQ KLLHQQQQLL  540
LQQQQLQQQQ QNQQQLNKMA AQVPNLAAQQ LQLSDQQLQL QLLQKLQQQQ QSLLSQPAVT  600
LAQLPLIQEQ QKLILDMQQQ LSNSQSLSQQ QTMPQQSTKV PSQATPPPPP SMQQEPQQKV  660
PQKHVGFTDT SHAAIPPTTS VNAISAAGSP MMANGAAHSV LTEEIPSCST SPSTANGNHL  720
VQPILGRNQQ CGMINNEKLP QSTAPMSIPS SLEAVTGIPR STKELPKLNS NVKQSVMASK  780
LPNTGPIPQN LVNSAPPTDY LETASSATSV WLSQADGLLH QGFPMSNFNQ QQIFKDAPPE  840
TDIQGTDPSN NALFGINNDG QLGFPMGADG FLSNGIDASK YQNHISTDID GNYRIPKDGQ  900
QEISSSMVSQ SFGASDMAFN SIDSGMNDGG FLNRTSWPPA APLKRMRTFT KVYKRGAVGR  960
SIDISHYSGY DELKHALARM FSIEGQLEEQ QRIGWKLVYK DHEDDILLLG DDPWEEFVNC  1020
VRCIRILSPQ EVQQMSLDGD LGNNILPNQA CSSSDGGNAW RARCDQNSGN PSTGSYDQFE  1080
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-142930196388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G252900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966097.10.0auxin response factor 19 isoform X1
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLK3XUY40.0K3XUY4_SETIT; Auxin response factor
STRINGSi005741m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-179auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]