PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G258000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 234aa    MW: 25326.3 Da    PI: 9.8474
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G258000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.9e-1897151256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++++L+ rqV vWFqNrRa+ k
  Sevir.4G258000.1.p  97 RKKLRLTKEQSTLLEDTFRAHNILSHAQKHELARRVNLSARQVEVWFQNRRARTK 151
                         788899***********************************************98 PP
2HD-ZIP_I/II1149.5e-3797185189
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                         +kk+rl+keq++lLE++F++++ L++ +K+elar+++l++rqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+ en+rL++e ++L++
  Sevir.4G258000.1.p  97 RKKLRLTKEQSTLLEDTFRAHNILSHAQKHELARRVNLSARQVEVWFQNRRARTKLKQTEVDCEILKRCCESLTGENQRLKHELAQLQR 185
                         69************************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.26E-1886154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-1892157IPR009057Homeodomain-like
PROSITE profilePS5007117.26593153IPR001356Homeobox domain
SMARTSM003896.8E-1395157IPR001356Homeobox domain
CDDcd000866.17E-1397154No hitNo description
PfamPF000463.9E-1597151IPR001356Homeobox domain
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
SMARTSM003404.9E-15153197IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-9153184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MFSARLAMEA EDFGKSWLGL GIGSGGGGGD MKRSHGERRS SALQFDLLFP QSVKEEAAVG  60
TNAEKGARKR LRITDDDGRR SHELSPSDDG GDGAATRKKL RLTKEQSTLL EDTFRAHNIL  120
SHAQKHELAR RVNLSARQVE VWFQNRRART KLKQTEVDCE ILKRCCESLT GENQRLKHEL  180
AQLQRSSAAA SGLYVQFPRG AAAAAGGVCP SCEKVTVTTS GGETSKSSSS YSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195101TRKKLRL
2145153RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G258000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966133.11e-152homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F65e-66HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A368QXX71e-151A0A368QXX7_SETIT; Uncharacterized protein
STRINGSi007238m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-44homeobox from Arabidopsis thaliana