PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G001500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 187aa    MW: 19797.6 Da    PI: 11.9147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G001500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000671221591355
                         HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R ++ +++  L +l+P +     +Kl   + Le+Av+Y+  Lq
  Sevir.5G001500.1.p 122 RGKVQERLRVLGRLVPGC-----RKLPAPDLLEEAVDYVAALQ 159
                         567778888999999998.....8***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.172109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-8115175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-7122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MISSSSSPPS SSSSGNKPPP PPPQQASKWR SGTQHKIYGR RLLDALRATG GGQPRAVKAA  60
ADSALALTAR GQTRWSRAIL LAGAACSRRR VLVKAGGKIR RRHRRPNKSS KAASFSQEEE  120
GRGKVQERLR VLGRLVPGCR KLPAPDLLEE AVDYVAALQM QVSTMRALAD ALAAAQLSDD  180
AGAAER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G001500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967324.11e-128transcription factor bHLH150-like
TrEMBLA0A368QZZ81e-126A0A368QZZ8_SETIT; Uncharacterized protein
STRINGPavir.Ia00876.1.p1e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165858
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.24e-12bHLH family protein