PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G004800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 620aa    MW: 67530.2 Da    PI: 7.0202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G004800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12465511455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Sevir.5G004800.2.p 465 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 511
                         799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.1E-5059244IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-15464515No hitNo description
SuperFamilySSF474596.28E-19464528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-18465524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10465511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MVMKMEIEDD GAVGGTGTWT EEDRALGAAV LGTDAFAYLT KGGGAISEGL VATSLPDDLQ  60
NKLQELVDSE GPGTGWNYAI FWQLSRTKSG DLVLGWGDGS CREPRDGEVG AAGSAGSDDT  120
KQRMRKRVLQ RLHIAFGVAD EEDYAPGIDQ VTDTEMFFLA SMYFAFPRRA GGPGQAFAAG  180
IPLWIPNTER KVFPANYCYR GFLANAAGFR TIVLVPFESG VLELGSMQHI AESSDTIQNI  240
RSVFAGASTN KAAVQRHEGN DPTPPERSPG LAKIFGKDLN LGRPSAVPAI GGVSKVDERS  300
WEQRSAAAGT SLLPNVQKGL QNFTWSQARG LNSHQQKFGN GVLIVSNEAA HRNNGAADSP  360
SPSQFQLQKA PQLQKLQLQK LPHIQKTPQL VTQQPLQPQV PRQIDFSAGS SSKSGVLVTR  420
AAVLDGESAE VDGLCKEEGP PPVIEDRRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR  480
FYALRAVVPN ISKMDKASLL GDAITYITDL QKKLKEMETE RERLLESGMV DPRERAPRPE  540
VDIQVVQDEV LVRVMSPMES HPVKKVFQAF EEAEVRVGES KVTGNNNGTV VHSFIIKCPG  600
TEQQTREKVI TAMSRAMSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-28459521264Transcription factor MYC2
5gnj_B6e-28459521264Transcription factor MYC2
5gnj_E6e-28459521264Transcription factor MYC2
5gnj_F6e-28459521264Transcription factor MYC2
5gnj_G6e-28459521264Transcription factor MYC2
5gnj_I6e-28459521264Transcription factor MYC2
5gnj_M6e-28459521264Transcription factor MYC2
5gnj_N6e-28459521264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446454RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G004800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549530.0BT054953.1 Zea mays full-length cDNA clone ZM_BFc0103E04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967368.10.0transcription factor bHLH13
RefseqXP_004967369.10.0transcription factor bHLH13
TrEMBLK3XPY30.0K3XPY3_SETIT; Uncharacterized protein
STRINGSi003963m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.34e-71bHLH family protein