PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G005700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Protein Properties

Length: 479aa MW: 52756.5 Da PI: 6.8474

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G005700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.3	3.6e-15	134	222	1	97
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v + +l lp f+++h k ++ ++lede+g+ + + + +++ l++GW++F+ +g+k+gD+v+F+l++ ++f Sevir.5G005700.1.p 134 FVKRMLQSHVVRGFWLGLPTYFCNKHlP-K--DDTGIVLEDENGQDHQTLY--LGAKQG--LSAGWRGFAIKHGIKVGDVVIFQLVRPTKF 217 89**********************52.2..3446***********..788877..9*********************987777 PP ..EEEEE CS B3 91 elvvkvf 97 +v ++ Sevir.5G005700.1.p 218 --KVFII 222 ..55555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.1E-19	128	225	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.87E-22	129	225	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.09E-23	132	223	No hit	No description
SMART	SM01019	1.0E-14	134	226	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.012	134	225	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-13	134	223	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MAIDPPLKRK RGKPPGSESA KSKMEQKMAL VKQRLALLDS ASSSSSSSGE TDKDDDLVPM 60 DDELAIVAAY QPIEIVCGDT GNKDEVIPLK ILASKGVESE KRGLPGQKIS ASYGSAMDRA 120 EEVQAKLPAE HPSFVKRMLQ SHVVRGFWLG LPTYFCNKHL PKDDTGIVLE DENGQDHQTL 180 YLGAKQGLSA GWRGFAIKHG IKVGDVVIFQ LVRPTKFKVF IIRANEFTTT DGAISLLNLE 240 AHKKGKLSKE ECSSDANSKE AEKASAVDHK VPRSDDDNVV FNEAIDGLRI SDSDMDFGDI 300 TSFSNFNIVV DSLVIDCKFH DHLRRTYYEL CCSQNSFLHK NLLKQLNLTL VVGVIMETIS 360 IAEGIRACKA QASSREDLLI WKKTLVSLEL LGMNVGFLLK RINGLLGLTA ESRDLSECQK 420 YRELKSERAR AGEKVKALEL MLSNVKGVLQ KMDAEMEEME SSVKRSGLTL QQLAAAPW*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MAIDPPLKRK RGKPPGSESA KSKMEQKMAL VKQRLALLDS ASSSSSSSGE TDKDDDLVPM  60
DDELAIVAAY QPIEIVCGDT GNKDEVIPLK ILASKGVESE KRGLPGQKIS ASYGSAMDRA  120
EEVQAKLPAE HPSFVKRMLQ SHVVRGFWLG LPTYFCNKHL PKDDTGIVLE DENGQDHQTL  180
YLGAKQGLSA GWRGFAIKHG IKVGDVVIFQ LVRPTKFKVF IIRANEFTTT DGAISLLNLE  240
AHKKGKLSKE ECSSDANSKE AEKASAVDHK VPRSDDDNVV FNEAIDGLRI SDSDMDFGDI  300
TSFSNFNIVV DSLVIDCKFH DHLRRTYYEL CCSQNSFLHK NLLKQLNLTL VVGVIMETIS  360
IAEGIRACKA QASSREDLLI WKKTLVSLEL LGMNVGFLLK RINGLLGLTA ESRDLSECQK  420
YRELKSERAR AGEKVKALEL MLSNVKGVLQ KMDAEMEEME SSVKRSGLTL QQLAAAPW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	13	LKRKRGKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G005700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF282802	8e-51	JF282802.1 Panicum virgatum clone B01_PVCAG-2 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014660753.1	0.0	B3 domain-containing protein Os01g0234100
Swissprot	Q0JP99	0.0	Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBL	A0A368QZQ9	0.0	A0A368QZQ9_SETIT; Uncharacterized protein
STRING	Si005087m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6080	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-38	B3 family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G005700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]