PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G005700.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Protein Properties

Length: 456aa MW: 50295.6 Da PI: 6.0422

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G005700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.5	3.3e-15	111	199	1	97
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v + +l lp f+++h k ++ ++lede+g+ + + + +++ l++GW++F+ +g+k+gD+v+F+l++ ++f Sevir.5G005700.2.p 111 FVKRMLQSHVVRGFWLGLPTYFCNKHlP-K--DDTGIVLEDENGQDHQTLY--LGAKQG--LSAGWRGFAIKHGIKVGDVVIFQLVRPTKF 194 89**********************52.2..3446***********..788877..9*********************987777 PP ..EEEEE CS B3 91 elvvkvf 97 +v ++ Sevir.5G005700.2.p 195 --KVFII 199 ..55555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.6E-19	105	202	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.28E-22	106	202	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.41E-23	109	200	No hit	No description
SMART	SM01019	1.0E-14	111	203	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.012	111	202	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-13	111	200	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MEQKMALVKQ RLALLDSASS SSSSSGETDK DDDLVPMDDE LAIVAAYQPI EIVCGDTGNK 60 DEVIPLKILA SKGVESEKRG LPGQKISASY GSAMDRAEEV QAKLPAEHPS FVKRMLQSHV 120 VRGFWLGLPT YFCNKHLPKD DTGIVLEDEN GQDHQTLYLG AKQGLSAGWR GFAIKHGIKV 180 GDVVIFQLVR PTKFKVFIIR ANEFTTTDGA ISLLNLEAHK KGKLSKEECS SDANSKEAEK 240 ASAVDHKVPR SDDDNVVFNE AIDGLRISDS DMDFGDITSF SNFNIVVDSL VIDCKFHDHL 300 RRTYYELCCS QNSFLHKNLL KQLNLTLVVG VIMETISIAE GIRACKAQAS SREDLLIWKK 360 TLVSLELLGM NVGFLLKRIN GLLGLTAESR DLSECQKYRE LKSERARAGE KVKALELMLS 420 NVKGVLQKMD AEMEEMESSV KRSGLTLQQL AAAPW*

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MEQKMALVKQ RLALLDSASS SSSSSGETDK DDDLVPMDDE LAIVAAYQPI EIVCGDTGNK  60
DEVIPLKILA SKGVESEKRG LPGQKISASY GSAMDRAEEV QAKLPAEHPS FVKRMLQSHV  120
VRGFWLGLPT YFCNKHLPKD DTGIVLEDEN GQDHQTLYLG AKQGLSAGWR GFAIKHGIKV  180
GDVVIFQLVR PTKFKVFIIR ANEFTTTDGA ISLLNLEAHK KGKLSKEECS SDANSKEAEK  240
ASAVDHKVPR SDDDNVVFNE AIDGLRISDS DMDFGDITSF SNFNIVVDSL VIDCKFHDHL  300
RRTYYELCCS QNSFLHKNLL KQLNLTLVVG VIMETISIAE GIRACKAQAS SREDLLIWKK  360
TLVSLELLGM NVGFLLKRIN GLLGLTAESR DLSECQKYRE LKSERARAGE KVKALELMLS  420
NVKGVLQKMD AEMEEMESSV KRSGLTLQQL AAAPW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G005700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014660753.1	0.0	B3 domain-containing protein Os01g0234100
Swissprot	Q0JP99	1e-179	Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBL	A0A368QZQ9	0.0	A0A368QZQ9_SETIT; Uncharacterized protein
STRING	Si005087m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-38	B3 family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G005700.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]