PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G020600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 220aa    MW: 23676.5 Da    PI: 6.0502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G020600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-1954104256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Sevir.5G020600.1.p  54 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 104
                         6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-2254112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-3254112IPR001471AP2/ERF domain
SMARTSM003801.5E-3854117IPR001471AP2/ERF domain
CDDcd000181.29E-1654113No hitNo description
PROSITE profilePS5103224.48754111IPR001471AP2/ERF domain
PfamPF008471.2E-1255103IPR001471AP2/ERF domain
PRINTSPR003674.2E-115566IPR001471AP2/ERF domain
PRINTSPR003674.2E-117793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MCGGAIIFDY IPARRRVSAA DFWPDDSEAD AEDSHAPRAS DERAPRAKRG RKNQYRGIRQ  60
RPWGKWAAEI RDPVKGVRVW LGTYPTAEAA ARAYDRAARR IRGAKAKVNF PNDTSSSPVV  120
ASAVGARAAP PATAAQAPAV LPPPKTEAGV SEEVKELSEE LMAYENYMNF LGIPYMEGGS  180
AAAAAAPVAV EEPQAAVPTG LWSFEDYTYY PASLSLFTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2254117569ATERF1
3gcc_A2e-2254117569ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G020600.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967520.11e-156ethylene-responsive transcription factor ERF071
TrEMBLK3XLS21e-154K3XLS2_SETIT; Uncharacterized protein
STRINGSi002845m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-23ERF family protein