PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G020700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 235aa MW: 26052.2 Da PI: 6.0184

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G020700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.3e-06	208	230	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ +F+++ +++ H+++H Sevir.5G020700.1.p 208 YTCQLCNATFTTPQTYQGHMSLH 230 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.71E-5	205	232	No hit	No description
Pfam	PF12874	8.2E-5	208	227	No hit	No description
SMART	SM00355	0.0026	208	230	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.806	208	234	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	210	230	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDPSSYPTKD KSSGQSDNSI FPLHQALRGN VEAPPPQPYP VFTHLPLTRT VASSGIIQSP 60 ARNEQEIMHS FLTVPLGEFL SVDERVQVAS LEPPSITSLL EGDPTAILQA HLDIAGVLDP 120 GPIFHDPTSF IPKENEMCKP LGSSSSQCDP YGNMTHAKPN YFDQSPMSSS HFLREEQVPS 180 VVNPSDKSND YIRAAMRYKF EFNRVQQYTC QLCNATFTTP QTYQGHMSLH KKRE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G020700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457384.2	1e-51	uncharacterized protein LOC8060818
TrEMBL	K3XT51	1e-164	K3XT51_SETIT; Uncharacterized protein
STRING	Si005107m	1e-165	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19398	6	9

Link Out ? help Back to Top
Phytozome	Sevir.5G020700.1.p