PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G022700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 384aa    MW: 41230.4 Da    PI: 9.8653
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G022700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.52.6e-2262114155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr+ WtpeLH+ F++a + L G++ A Pk+il lm+v+g+t+e+v+SHLQk+Rl
  Sevir.5G022700.1.p  62 KPRVIWTPELHSIFLKAYNAL-GED-AAPKKILALMNVDGITRENVASHLQKHRL 114
                         79*******************.655.99**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.1359117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2361118IPR009057Homeodomain-like
SuperFamilySSF466893.76E-1661118IPR009057Homeodomain-like
TIGRFAMsTIGR015578.2E-2062114IPR006447Myb domain, plants
PfamPF002492.8E-667113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEAERNKKPR KRKKSGSSRS AAETATSSSL PSAGDGNGGA GQQRRQLAGE GQQQQQQLHR  60
GKPRVIWTPE LHSIFLKAYN ALGEDAAPKK ILALMNVDGI TRENVASHLQ KHRLSLKREE  120
QRMPGKVHQR PPLHAEASSP TPTPVPSLHP PAQAPAPSSL HPLPPPQAPF AALTMSPLQI  180
GHGHQHLLQT PPDYCFSSSS SNAAPTSLLL HYPHPGFLPM MQPIQHPLDA TAVATRRKLF  240
KKQVAGRDAT MAQRAAAAAA SGGYNFMLVR NDVTQASQTV SITGESSVHE ANMRYEEAEI  300
RMEHLQMAAE GEEGQGRAAE RGAAAEMAAK AEEGQVQAAE PRTAAAGSSS PPGSSSIREQ  360
YLKIDDITDV SWDFCGIPWR KTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-1762118562ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1612KKPRKRK
2913RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G022700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819305.15e-79probable transcription factor GLK2
TrEMBLK3XSG50.0K3XSG5_SETIT; Uncharacterized protein
STRINGSi004864m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2096956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-17response regulator 1