PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G022800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 340aa    MW: 35553.4 Da    PI: 8.9482
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G022800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.51.3e-2277130155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k rl+W+p+LH +Fv+a ++L G + A+P +il+ mk++g+t+++v+SHLQkYR 
  Sevir.5G022800.2.p  77 KDRLVWSPKLHGKFVRACNEL-GVKDAVPMKILRRMKINGITRAQVASHLQKYRG 130
                         68*******************.999*****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-2375134IPR009057Homeodomain-like
SuperFamilySSF466892.15E-1576133IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-1977129IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAAGGGNNGN GAASTETGTT TVVESHPPQQ AVTPKKPKKR KKSESSDEQS SGATVPGGCT  60
APDGDGGRDP KQEANKKDRL VWSPKLHGKF VRACNELGVK DAVPMKILRR MKINGITRAQ  120
VASHLQKYRG SLSKRKDEET GGNRGDATTV LVVHHTPLDA ASPSPPATAT APPPAIPPSV  180
PPSPQSPLET PDTMCQPPNG HSSDHAVAAA NLHHQQLQLL LLPPVQHQHC FPPPPLLHQV  240
GAVTITEEKT PSMMQQQAAV APASQHCPTL VGVEQAAGAP VPASAAENGP PVSMLRGTCL  300
IDRSHILLFS STTYICTSTS TSVICAPIIS SYKHFLRPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13440KKPKKRK
23642PKKRKKS
33741KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G022800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682941.10.0uncharacterized protein LOC101786344 isoform X1
RefseqXP_022682942.10.0uncharacterized protein LOC101786344 isoform X1
RefseqXP_022682943.10.0uncharacterized protein LOC101786344 isoform X1
TrEMBLA0A368R0G40.0A0A368R0G4_SETIT; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-17G2-like family protein