PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G060300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 165aa    MW: 17882 Da    PI: 8.4807
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G060300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.3e-096687627
                        -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                        C++f rtGtCkyGd+C++ H++
  Sevir.5G060300.1.p 66 CHHFVRTGTCKYGDSCRYFHPK 87
                        ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004511.7E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576675.2E-16448No hitNo description
PfamPF062207.4E-11537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.8966088IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-46287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-76489IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-76587IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-66586IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPA ARKRHLQGVQ HQRARALWYD TVRHQDQHGG ASSLLLPDGT  60
LAKGVCHHFV RTGTCKYGDS CRYFHPKPDG ANPSLAAPGP GPGAMVHQSN FLASQPNLVG  120
YQAAERNSFS GNVLGAHSSW GNLPPSLQPP PEGSYPPLPF VDWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G060300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9445351e-144EU944535.1 Zea mays clone 221714 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967856.11e-118zinc finger CCCH domain-containing protein 3
SwissprotQ0JP111e-76C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLK3XMN31e-117K3XMN3_SETIT; Uncharacterized protein
STRINGSi003156m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.13e-40C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]