PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G068500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 419aa    MW: 44349.9 Da    PI: 7.3229
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G068500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.7e-053093471255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Sevir.5G068500.2.p 309 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 347
                         7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.163297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-11307358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-5307351No hitNo description
Gene3DG3DSA:4.10.280.101.0E-8311354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MMASSSSSSN LSDHLVQDDL PWPSSSSLPF APTPHSAVIG GSHQWSQQPP MLNCGDHHHS  60
DELEVLLSAQ GHNHSHHAAS PLAPHQLSSL LMMQDLGFQW SNCSFADAVS VPTNGQQDGH  120
SKIKEEQPFN PRSSSCAGAA MAYHDIVLDG GGGGGGLPAM AAAGLDGAVL PSVNISRPPQ  180
QLMKAWPAAP PPLPGDAFEI LASSRLCKTL LLSPSVLLHN GMPLLRSEHV PHGPPPAHPQ  240
GPSGDNYRQM VGAALVNEAA GGNRHWSAEH DAACQKAARP VPSSQAPSSL KKPRVESRAS  300
TIVPSFKVRK EKLGDRIAAL QQLVSPFGKT DTASVLMEAI GYIKFLQDQV ETLSGPYLKS  360
SRNKKPRTTQ RGPSDANGGE EETRLDLRSR GLCLVPLSCT SYVTNENGAW APPNFRGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G068500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194937e-54AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967935.10.0transcription factor bHLH123 isoform X2
TrEMBLK3XI700.0K3XI70_SETIT; Uncharacterized protein
STRINGSi001592m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-47bHLH family protein