PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G071700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 218aa    MW: 23293.4 Da    PI: 10.2368
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G071700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.3e-103281454
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        a +e+ErrRR++++s   +L +l+P   +  p   ++ +  L +A  YIk+L
  Sevir.5G071700.2.p 32 ARKEIERRRRQHMKSLCVKLASLIPReHF--PRDAMTQVGSLNEAAAYIKKL 81
                        679***********************876..9999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.6392881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-53185No hitNo description
PfamPF000103.9E-73281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-113298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-133397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-73487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEMGAKKSRS SDTATAGRRS STSNSSGASA VARKEIERRR RQHMKSLCVK LASLIPREHF  60
PRDAMTQVGS LNEAAAYIKK LKERVDELQQ KRSSAQLMAA AMRGGGGGSA ASTSAATVMS  120
GGGGARSEEA AEEAPVVEVL HRHDDGSSLD VVLVSGVERS FKLHEVVTVL EEEGAEIINA  180
NLSVADRKVF HTIHCRAFSP RIGIEVSRVS ERLRALI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G071700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967962.11e-153transcription factor bHLH162 isoform X1
RefseqXP_012701638.11e-153transcription factor bHLH162 isoform X1
RefseqXP_022682228.11e-153transcription factor bHLH162 isoform X1
RefseqXP_022682229.11e-153transcription factor bHLH162 isoform X1
TrEMBLA0A368R2691e-152A0A368R269_SETIT; Uncharacterized protein
STRINGSi002881m1e-151(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.18e-12bHLH family protein