PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G071800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 220aa    MW: 22836 Da    PI: 9.9664
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G071800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.34.9e-073799654
                        HHHHHHHHHHHHHHHHHHHCTSCCC................TTS-.STCHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPkas.............kapskK.lsKaeiLekAveYIksL 54
                        + +E++RR +++    +L +l+P+a              ++p+k  ++  + L  A  YIk L
  Sevir.5G071800.1.p 37 KDVEKNRRLHMKGLCLKLSSLIPPAArhasllseaaasaSNPNKDtVTQLDQLDSAAAYIKLL 99
                        689*********************666************7777777***************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577132No hitNo description
Gene3DG3DSA:4.10.280.102.5E-935110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-836110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKSRRQSSGG SSAGATAAGE GNTHSSGGGG GCKLERKDVE KNRRLHMKGL CLKLSSLIPP  60
AARHASLLSE AAASASNPNK DTVTQLDQLD SAAAYIKLLK ERIEALKRRK EGRGGGKGGA  120
GAAAAPVGGG AGGVRMPVIE VRYQDGTLDV VLISEAERPF KLHEVITVLE QEGAEVVSAS  180
FSVVGDKIFY TVHSQALSPR IGLDAARVSE RLQDLLLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G071800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388181e-145BT038818.1 Zea mays full-length cDNA clone ZM_BFb0332C18 mRNA, complete cds.
GenBankKJ7268681e-145KJ726868.1 Zea mays clone pUT3409 bHLH transcription factor (bHLH76) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967963.11e-154transcription factor bHLH168
TrEMBLK3XLS41e-153K3XLS4_SETIT; Uncharacterized protein
STRINGSi002847m1e-154(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-17bHLH family protein