PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G077800.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 761aa    MW: 82331 Da    PI: 5.2207
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G077800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.44.4e-2254109156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++eLe+lF+++++p++++r eL+++lgL+ rqVk+WFqNrR+++k
  Sevir.5G077800.3.p  54 KKRYHRHTPQQIQELEALFKECPHPDEKQRGELSRRLGLDPRQVKFWFQNRRTQMK 109
                         678899***********************************************999 PP
2START1901.2e-592705021206
                         HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCS.CHHHHHHHHHCCCGGCT-TT-S.. CS
               START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvd.mvlallveellddkeqWdetla.. 77 
                         ela +a++elvk+a+ +ep+W  s       e++n +e+ q+f +  +     + +ea+r+sg+v+ ++++ lve+l+d + +W+ ++   
  Sevir.5G077800.3.p 270 ELAISAMDELVKLAQIDEPLWLPSLngspnkEMLNFEEYAQSFLPCIGvkpvgYVSEASRESGLVIiDDSVALVETLMDER-RWSDMFScm 359
                         57889********************999999999*********998889**************997245679*********.********* PP

                         ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEEEE CS
               START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgili 154
                           ka++le ++sg      g l lm+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d  ++++++    +++ vR+++lpSg+++
  Sevir.5G077800.3.p 360 iaKATILEEVTSGiagsrnGMLLLMKAELQVLSPLVPiREVTFLRFCKQLAEGAWAVVDVSIDglVRDQNSAtisNAGNVRCRRLPSGCVM 450
                         *9************************************************************95433444446899*************** PP

                         EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         ++++ng++kvtwveh++++++++h+l+r+l++sgla+ga++w+a lqrqce+
  Sevir.5G077800.3.p 451 QDTPNGYCKVTWVEHTEYDEASVHQLYRPLLRSGLAFGARRWLAMLQRQCEC 502
                         **************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-2235111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-2439111IPR009057Homeodomain-like
PROSITE profilePS5007118.28551111IPR001356Homeobox domain
SMARTSM003894.8E-2152115IPR001356Homeobox domain
CDDcd000866.10E-2053111No hitNo description
PfamPF000461.4E-1954109IPR001356Homeobox domain
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PROSITE profilePS5084847.171261505IPR002913START domain
SuperFamilySSF559611.37E-31263502No hitNo description
CDDcd088755.82E-115265501No hitNo description
SMARTSM002341.7E-48270502IPR002913START domain
PfamPF018524.6E-52271502IPR002913START domain
SuperFamilySSF559618.24E-22522730No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MGGGRALPGG AGDGSARDAD AENDSRSGSD HLDAMSGGGE DEDDAEPGNP RKRKKRYHRH  60
TPQQIQELEA LFKECPHPDE KQRGELSRRL GLDPRQVKFW FQNRRTQMKT QLERHENALL  120
KQENDKLRAE NMTIREAMRT PMCGSCGSPA MLGEVSLEEQ HLCIENARLK DELNRVYALA  180
TKFLGKPMAM LSGPMLQPHL SSLPMPSSSL ELAVGGFRGL GSIPSATMPG SMSEFAGGVS  240
SPLGTVITPA RATGSAPPSM VGIDRSMLLE LAISAMDELV KLAQIDEPLW LPSLNGSPNK  300
EMLNFEEYAQ SFLPCIGVKP VGYVSEASRE SGLVIIDDSV ALVETLMDER RWSDMFSCMI  360
AKATILEEVT SGIAGSRNGM LLLMKAELQV LSPLVPIREV TFLRFCKQLA EGAWAVVDVS  420
IDGLVRDQNS ATISNAGNVR CRRLPSGCVM QDTPNGYCKV TWVEHTEYDE ASVHQLYRPL  480
LRSGLAFGAR RWLAMLQRQC ECLAILMSPD TVSANDSSVI TQEGKRSMLK LARRMTENFC  540
AGVSASSARE WSKLDGATGS IGEDVRVMAR KSVDEPGEPP GVVLSAATSV WVPVAPEKLF  600
NFLRDEQLRA EWDILSNGGP MQEMANIAKG QEHGNSVSLL RASAMSANQS SMLILQETCT  660
DASGSMVVYA PVDIPAMQLV MNGGDSTYVA LLPSGFAILP DGPSTGADHK TGGSLLTVAF  720
QILVNSQPTA KLTVESVETV NNLISCTIKK IKTALQWDSA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14955PRKRKKR
25054RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G077800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632490.0BT063249.1 Zea mays full-length cDNA clone ZM_BFc0042P14 mRNA, complete cds.
GenBankBT0644530.0BT064453.1 Zea mays full-length cDNA clone ZM_BFc0170E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968001.10.0homeobox-leucine zipper protein ROC5 isoform X1
RefseqXP_004968002.10.0homeobox-leucine zipper protein ROC5 isoform X2
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLK3XEM70.0K3XEM7_SETIT; Uncharacterized protein
TrEMBLK3XEN00.0K3XEN0_SETIT; Uncharacterized protein
STRINGSi000344m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]