PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G096000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 249aa    MW: 27230.2 Da    PI: 7.1411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G096000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-1288134354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h e+Er+RRdr+N +f  Lr  +P        +++ a+ L  Av YI +L
  Sevir.5G096000.1.p  88 MSHVEAERQRRDRLNRRFCDLRAAVPRV-----SRMDRASLLSDAVAYIAEL 134
                         589************************5.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.76785134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1588147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-989134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1489146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1091140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDELACPASS GVPPFPVSFS AVSHDQHPPA LEFMSCDEIL EQWLLGKQDE EEPRDGRRAI  60
QPPPPAPFVE RSRPGAWKPG PRTCAPAMSH VEAERQRRDR LNRRFCDLRA AVPRVSRMDR  120
ASLLSDAVAY IAELRGRVEQ LEKEASRRAS LGHCSLPGAP EQEDMALEAW MIGPEAAALR  180
LRTAAERHAP ARLMAALRAL DLPVHHVCVC RVGGVTVQDV VVDVPSAGLR REGQLRAALR  240
GLLLQESG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1888144763Transcription factor MYC2
5gnj_B3e-1888144763Transcription factor MYC2
5gnj_E3e-1888144763Transcription factor MYC2
5gnj_F3e-1888144763Transcription factor MYC2
5gnj_G3e-1888144763Transcription factor MYC2
5gnj_I3e-1888144763Transcription factor MYC2
5gnj_M3e-1888144763Transcription factor MYC2
5gnj_N3e-1888144763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499RQRRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G096000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282819e-49KJ728281.1 Zea mays clone pUT6560 bHLH transcription factor (bHLH8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971643.11e-174transcription factor bHLH14
TrEMBLK3XSY01e-173K3XSY0_SETIT; Uncharacterized protein
STRINGSi005033m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-19bHLH family protein