PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G110300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 254aa    MW: 27543.6 Da    PI: 9.2548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G110300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.7e-1066110554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+e+ErrRR+riN  + +Lr+++P       + ++Ka+ L ++v+ +k L
  Sevir.5G110300.1.p  66 HSEAERRRRERINAHLTTLRRMVPDT-----RQMDKATLLARVVDQVKLL 110
                         9************************8.....689***9999999977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1352118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.58361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-866110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1366123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1067116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048737.16E-7155221No hitNo description
Gene3DG3DSA:3.30.70.2607.4E-4155220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAACQPMQEG KELQGLQPYD GCDPSVFVGP LLLPRQASSA PPAPPALSSS SGSGRSATEA  60
RALKIHSEAE RRRRERINAH LTTLRRMVPD TRQMDKATLL ARVVDQVKLL KREASEATQS  120
MALPPETNEV SIELHAGDSG VVVAGTDKMI YMKASISCDD RPDLIAGLIQ AFHGLRLRTV  180
RADLTSLGGR VQHVFVLCRE EGWGSEGASL RSLKEALRQA LAKVASPEMA YGSSPFQSKR  240
QRILESHYSI MSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G110300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968277.10.0transcription factor bHLH30
RefseqXP_004968280.10.0transcription factor bHLH30
TrEMBLK3XL820.0K3XL82_SETIT; Uncharacterized protein
STRINGSi002655m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-29bHLH family protein