PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G110700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 217aa    MW: 24041.1 Da    PI: 9.9716
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G110700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.2e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        ++rWT eE+  l  +v+++G g+W+tI +          R+  ++k++w++
  Sevir.5G110700.2.p  5 KQRWTSEEEAALRTGVAKHGVGNWRTILNDPElssilCYRSNVDLKDKWRN 55
                        79******************************999*978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.939161IPR017930Myb domain
SuperFamilySSF466895.31E-16259IPR009057Homeodomain-like
SMARTSM007178.9E-8459IPR001005SANT/Myb domain
PfamPF002492.6E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-13556IPR009057Homeodomain-like
CDDcd116601.26E-19657No hitNo description
Gene3DG3DSA:1.10.10.102.0E-19120194IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.62E-18121196IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.4E-13122187IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150425.399124192IPR005818Linker histone H1/H5, domain H15
PfamPF005383.5E-11125185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRTGV AKHGVGNWRT ILNDPELSSI LCYRSNVDLK DKWRNMNVTV  60
TASSSRDKAR SAVKKTRAGP KNNDQPAAIS TVTSDADDEI VDVKPIASVS SEAWNTSNSK  120
KSQSHSRLDN IIMEAIKNLN EPTGSHRTTI ANYIEEQYWP PSDFDHLLSA KLKDLAASGK  180
LIKVNRKYRI APSSPRLEGR SPKMLLLEEN WLASQL*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G110700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2806301e-179AY280630.1 Zea mays single myb histone 5 (Smh5) mRNA, complete cds.
GenBankBT0372971e-179BT037297.1 Zea mays full-length cDNA clone ZM_BFb0161M01 mRNA, complete cds.
GenBankBT0862121e-179BT086212.1 Zea mays full-length cDNA clone ZM_BFc0130J16 mRNA, complete cds.
GenBankDQ2450141e-179DQ245014.1 Zea mays clone 12204 mRNA sequence.
GenBankJX4699111e-179JX469911.1 Zea mays subsp. mays clone UT3159 MYB-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968284.11e-154single myb histone 5
RefseqXP_004968285.11e-154single myb histone 5
RefseqXP_022682871.11e-154single myb histone 5
SwissprotC0HIA31e-118SMH6_MAIZE; Single myb histone 6
TrEMBLK3XKF21e-153K3XKF2_SETIT; Uncharacterized protein
STRINGSi002372m1e-154(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-55telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]