PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G111800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 260aa    MW: 28190.4 Da    PI: 5.1271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G111800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-2080130155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta eAa a+++a+k+++g
  Sevir.5G111800.1.p  80 CPYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTAVEAAHAYDEAAKAMYG 130
                         67*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-3781144IPR001471AP2/ERF domain
PROSITE profilePS5103222.11581138IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2181139IPR016177DNA-binding domain
PfamPF008478.1E-1481130IPR001471AP2/ERF domain
CDDcd000182.30E-3082140No hitNo description
Gene3DG3DSA:3.30.730.108.6E-3282139IPR001471AP2/ERF domain
PRINTSPR003672.9E-98293IPR001471AP2/ERF domain
PRINTSPR003672.9E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDLGHGAQGG EGDSSGSGGQ LRKKRMRRKS TGPDSIAETI KWWKEQNQKL QDESGSRKAP  60
AKGSKKGCMA GKGGPENGNC PYRGVRQRTW GKWVAEIREP NRGKRLWLGS FPTAVEAAHA  120
YDEAAKAMYG PKARVNFPEN SADANSGCTS ALSLLASSVP AAALHGFNEK DEVESVETEV  180
HEVKAEANDD LGSIHVECKS VEVLQSEEIV LQKEGNVSYD YFNVEEVVEM IIIELNADKK  240
IEVHEECLGG DDGFSLFAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1682138360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G111800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1327440.0HQ132744.1 Setaria italica dehydration responsive element-binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968294.10.0dehydration-responsive element-binding protein 2A isoform X1
SwissprotA2WL191e-125DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A368R3N40.0A0A368R3N4_SETIT; Uncharacterized protein
TrEMBLK3XJJ40.0K3XJJ4_SETIT; Uncharacterized protein
STRINGSi002067m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-36ERF family protein