PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G119500.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 178aa MW: 19145.2 Da PI: 11.2381

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G119500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.5e-10	84	127	2	45
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L Sevir.5G119500.1.p 84 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKDLELRNAEL 127 78899***********************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-13	83	147	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.1E-10	84	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.162	85	148	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-12	88	145	No hit	No description
CDD	cd14704	2.63E-15	88	138	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.1E-16	88	147	No hit	No description
PROSITE pattern	PS00036	0	90	105	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MAAQEQEQEK QQAKTSTTSS LPSSSERSSS SAPNNLREGG RCRAHASTFR PKEDGKQGQL 60 VVAAGAQGQP LAAGKKRGRT AGDKEQNRLK RLLRNRVSAQ QARERKKAYL TELEAKAKDL 120 ELRNAELEQR VSTLQNENNT LRQILKNTTA HASKRSSGGG AGGKGGDGGK KHHFTKS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G119500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT017937	1e-133	BT017937.1 Zea mays clone EL01N0520G04.c mRNA sequence.
GenBank	EU958008	1e-133	EU958008.1 Zea mays clone 1640173 transcription factor HY5 mRNA, complete cds.
GenBank	EU976642	1e-133	EU976642.1 Zea mays clone 986002 transcription factor HY5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968380.1	1e-73	transcription factor HY5
Swissprot	Q9SM50	8e-35	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A3L6SSD3	2e-73	A0A3L6SSD3_PANMI; Transcription factor HY5-like
STRING	Pavir.Eb00436.1.p	1e-76	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1408	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	7e-32	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G119500.1.p

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]