PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G127800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NF-YC

Protein Properties

Length: 209aa MW: 22263.8 Da PI: 4.5834

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G127800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	46.1	1e-14	88	169	19	99
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprd 99 +lP+ r+k+i+++d d+k++++ea l++ a elf+ l+ + a rr+++ + + aa ++ + dfl+d + Sevir.5G127800.1.p 88 PALPVGRVKRIMRVDRDIKKVTSEATLLIAAATELFLGSLAAGAHTAAARRGRRAVRAAHVRAAArAHRPTADFLLDCLHAE 169 579********************************************************88761566799***98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.7E-18	88	151	IPR009072	Histone-fold
SuperFamily	SSF47113	9.72E-16	89	166	IPR009072	Histone-fold
Pfam	PF00808	2.8E-13	90	151	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MATAAAAAVD EPTVAMEEEL RKEGELVEEP TEAMEQVAED REEIGGPAEA TEQVEEEREE 60 ATDPAEPMEQ VGEDREEAEA EEGASLRPAL PVGRVKRIMR VDRDIKKVTS EATLLIAAAT 120 ELFLGSLAAG AHTAAARRGR RAVRAAHVRA AARAHRPTAD FLLDCLHAEE EAPRARPVAG 180 SAGGGGGREA KPLPRGTRRI DAFFQKVT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G127800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU970773	1e-132	EU970773.1 Zea mays clone 350567 histone-like transcription factor and archaeal histone family protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968444.1	1e-139	DNA polymerase epsilon subunit C
TrEMBL	K3XRQ9	1e-138	K3XRQ9_SETIT; Uncharacterized protein
STRING	Si004603m	1e-139	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13342	26	28

Link Out ? help Back to Top
Phytozome	Sevir.5G127800.1.p