PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G136900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 468aa    MW: 49924.2 Da    PI: 7.2167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G136900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12269311855
                         HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          Er+RR+++N++f+ L+++lP+ a      K +K +iL +A eY++sL+
  Sevir.5G136900.1.p 269 SERKRREKLNDSFHALKTVLPPgA------KKDKTSILIRAREYVRSLE 311
                         6********************966......99999***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.948261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-15262327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-12263315No hitNo description
Gene3DG3DSA:4.10.280.107.2E-13265309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9269311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146866.99E-4302330No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-4310328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDTGGWIHGY VNNTSGGGNN GFMCGYAAVS SCTPAELQYR EEEEQQFLIS SQIQHHLNQI  60
SMRMNMDDEA SVYVPSSNDG GVSLIGIHSP IIVDGLLDPH HHAGSFPSSS SSSSLSLPSA  120
SLSCSPESSS AHVLAAPAAT TTACSSQYLE VSSQVPLPPP AVPYGDHQYA NLHVPAPAHH  180
DVAAAMAPPE LPPATNAGGA FRRYARHLGP KRPPKPGACG QRMFKTAMAV LSKMHVAARY  240
NQQYYYQQAA AAAEAAPPPS VNQLQHMFSE RKRREKLNDS FHALKTVLPP GAKKDKTSIL  300
IRAREYVRSL ESKVSELEEK NRSLESRLLR GEGSGRKDAG SGGNDCSGDE KVQVEIARAT  360
KEERAAEPCA DDLCTLKIVV RSPCNMTDMM LRTLQCLRNQ IGDGVSLVAM STSDSATGVN  420
TCPRPVLTLQ IKSPPGARWE EQPVKDAVAK VVADALTTTT TPSAAAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274ERKRRE
2270275RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G136900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971740.10.0putative transcription factor bHLH041
TrEMBLK3XHF70.0K3XHF7_SETIT; Uncharacterized protein
STRINGSi001328m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.19e-23bHLH family protein