PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G139900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 239aa    MW: 25268 Da    PI: 6.6365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G139900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.3e-174593355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  Sevir.5G139900.1.p 45 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 93
                        9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-124393IPR001471AP2/ERF domain
SMARTSM003802.4E-3444107IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2044102IPR016177DNA-binding domain
PROSITE profilePS5103222.844101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-3144102IPR001471AP2/ERF domain
PRINTSPR003673.0E-94556IPR001471AP2/ERF domain
CDDcd000183.49E-2945103No hitNo description
PRINTSPR003673.0E-96783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSDLSSDTSS TSSYSPSPST SSSSRGGGGG GKKRPREPAG DVPAYRGVRM RAWGKWVSEI  60
REPRKKSRIW LGTFPCPEMA ARAHDVAALS IKGARAVLNF PDLAPALPRP ESLAPRDVQA  120
AAARAALMHH KHQKSGGGVS SSSSSSSSAA PAAGSAAAAA DDAQRRTPGP AAHRHDDPEP  180
EPSREERQPA QVEVAELVFD ELAPLWVEDV VEFGPSDHPW TPYDGLDAVG FQPLLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-15451011572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G139900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538521e-100DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds.
GenBankGU7850081e-100GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds.
GenBankHG6703061e-100HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968548.21e-167ethylene-responsive transcription factor ERF034
TrEMBLK3XLH61e-166K3XLH6_SETIT; Uncharacterized protein
STRINGSi002749m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-44ERF family protein