PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G147800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 448aa    MW: 46224.3 Da    PI: 7.0967
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G147800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.72.1e-3487184286
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaessss 80 
                         +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +             ++++s++ ++s ++
  Sevir.5G147800.1.p  87 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawqptatvanaAAPPSSSTHPDSAEN 177
                         79**************************************************************887777777665444444443333333 PP

                 TCP  81 sas.nss 86 
                         s++ ++ 
  Sevir.5G147800.1.p 178 SDDqAQA 184
                         3320222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3187184IPR005333Transcription factor, TCP
PROSITE profilePS5136933.25789147IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGDAGQSHHH HHGFQPQLLS FGGVGGQHHV HQFAAQAPAA ASHSRSRGGA GAGGEIVAAT  60
PASHSRVRGG GGGEIVAVQG GHIVRSTGRK DRHSKVCTAR GPRDRRVRLS AHTAIQFYDV  120
QDRLGYDRPS KAVDWLIKNA KDAIDKLEVL PAWQPTATVA NAAAPPSSST HPDSAENSDD  180
QAQAITVAHT SFDFPGAGGA SGGAGGTGFL PASLDSDSIA DTIKSFFPMA GTAGGEASSS  240
TAAAQSSAMG FQSYTPDLLS RTGSHSQELR LSLQSHPDPM FQQQQDRSHG HGGNGSAQQA  300
LFPGAASYSF GGGGAMWAEQ AQGQQRMVPW NVPDPGGGST GGYLFNVSQQ AAHMQAALAG  360
QSQFFFQRGP LQSSNQPSDR GWPETVEADN PMQHHQGQGG LSPTVFAPGV GFPGFRIPTR  420
IQGDEEHNGG GGNGDKTPPS VSSASHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2094147154Putative transcription factor PCF6
5zkt_B1e-2094147154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G147800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557080.0EU955708.1 Zea mays clone 1543050 mutant cincinnata mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968615.10.0transcription factor PCF5
RefseqXP_022682845.10.0transcription factor PCF5
SwissprotQ8LT071e-180PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A368R4V00.0A0A368R4V0_SETIT; Uncharacterized protein
STRINGSi004564m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-55TCP family protein