PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G157600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 173aa MW: 18547.7 Da PI: 11.2426

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G157600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.6	3.4e-06	104	153	9	55
HHHHHHHHHHHHHHHHCTSCCC........TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkas.....kapskKlsKaeiLekAveYIksLq 55 r+R++ i+ ++e Lr+l+P + +a++++l+ e L +A YI Lq Sevir.5G157600.1.p 104 RRKRVEAIRRKMEALRRLVPACEggdgeRADDGRLE--ELLLHAAGYILRLQ 153 69*******************988999999999999..99999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.88	95	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-8	96	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-6	105	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MPPLPSNLYI SNSPLISRCH GCRCGIVRDP AASSLPPPYR QPGAPPGIYM AAHACYGGGV 60 AGAAPAAAAA RRLKLGRPSR PSLMKARKLR KGGGKCRPRS AASRRKRVEA IRRKMEALRR 120 LVPACEGGDG ERADDGRLEE LLLHAAGYIL RLQMQVRVMQ VMVHALNNPP ED*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G157600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701703.1	3e-79	uncharacterized protein LOC105914476
TrEMBL	K3XN77	8e-78	K3XN77_SETIT; Uncharacterized protein
STRING	Si003350m	1e-78	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9111	21	26

Link Out ? help Back to Top
Phytozome	Sevir.5G157600.1.p