PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G160600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 134aa    MW: 14527.3 Da    PI: 10.2226
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G160600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.78.8e-202256135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++
  Sevir.5G160600.1.p 22 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 56
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.2571652IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-151673IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-131857No hitNo description
Gene3DG3DSA:3.30.50.103.0E-162057IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.05E-132157No hitNo description
PROSITE patternPS0034402247IPR000679Zinc finger, GATA-type
PfamPF003201.6E-172256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MGSADRSEID GVVVAEKGAR SCVECRATTT PMWRSGPTGP RSLCNACGIR YRKKRRQELG  60
LDHKQQQQQN QQQRQQHNGE AKTEVKDSSS NSSSSGSSNL QAVQKRRLLM GVEEAALLLM  120
TLSSSPTSTL LHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G160600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968702.11e-93GATA transcription factor 23
TrEMBLA0A368R5933e-92A0A368R593_SETIT; Uncharacterized protein
TrEMBLK3XR764e-92K3XR76_SETIT; Uncharacterized protein
STRINGSi004417m7e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.15e-19GATA transcription factor 23