PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G183300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 189aa    MW: 19165.1 Da    PI: 10.6815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G183300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.2e-093982754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        e+Er RR+++   ++eL  llP +     ++  K  iLe+A+ Y+  L
  Sevir.5G183300.1.p 39 ENERARRRHMSRLYAELGALLPDL----PPRAPKTRILEEAIAYVGAL 82
                        89*********************6....389*************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.5733282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-103691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-73888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-63982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-83990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-63983No hitNo description
SuperFamilySSF550219.51E-5130181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAERRQLALS LAAKTKASPA GTATVASSVP PEQLPATVEN ERARRRHMSR LYAELGALLP  60
DLPPRAPKTR ILEEAIAYVG ALRGTVAELE ARGPFAGAGR LTAADGGGAG GGEVLAAGKA  120
SCFAARMPAA RRPGALTRVL EVFRRHGVPV LAATVTINDG EAAVTVTTAA VAPSVVEGIK  180
ADISISIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G183300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682965.11e-127uncharacterized protein LOC111257451
TrEMBLK3XRF21e-125K3XRF2_SETIT; Uncharacterized protein
STRINGSi004494m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.19e-10bHLH family protein