PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G212600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 219aa    MW: 23346.4 Da    PI: 5.3151
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G212600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993e-31159217159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYG+K vk+s++pr+YYrC+sagC vkk+ver+++d+++v++tY g Hnh+
  Sevir.5G212600.1.p 159 LDDGYRWRKYGKKLVKNSPNPRNYYRCSSAGCGVKKRVERARDDESFVITTYDGVHNHP 217
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-33147217IPR003657WRKY domain
SuperFamilySSF1182906.28E-28152217IPR003657WRKY domain
PROSITE profilePS5081131.41154218IPR003657WRKY domain
SMARTSM007743.1E-36159218IPR003657WRKY domain
PfamPF031063.1E-25160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSSSYQALLS LSPADWIGGS EYAGDGDDAA SAVVSGYLSF DIGVDDVGEE EYYHHHPPEP  60
AAFHAEPQQA PETLLLDTLQ AQADYCASGV AGSSSEGELG KQSHTDASAL TSEQRDNGFT  120
ASTGGGARGL RLPLPAAAAR KRDGGGRIAF KTRSEVDVLD DGYRWRKYGK KLVKNSPNPR  180
NYYRCSSAGC GVKKRVERAR DDESFVITTY DGVHNHPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27146216474Probable WRKY transcription factor 4
2lex_A4e-27146216474Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G212600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085221e-72AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence.
GenBankAY3418461e-72AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds.
GenBankCT8313671e-72CT831367.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006O16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969405.11e-159probable WRKY transcription factor 50
TrEMBLK3XLT91e-158K3XLT9_SETIT; Uncharacterized protein
STRINGSi002862m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-37WRKY DNA-binding protein 50