PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G227500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19307.9 Da    PI: 5.9056
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G227500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.5e-151161151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ie+++  + tf +Rr  ++K A+ELS+L++a+v v++ s++ k+  +s+
  Sevir.5G227500.1.p 11 KFIEDERDHSLTFFNRRSRLFKDASELSTLTGARVTVVVESKNKKVSSFST 61
                        79*********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-7262IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.6363IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-6525IPR002100Transcription factor, MADS-box
CDDcd001201.83E-11662No hitNo description
SuperFamilySSF554554.32E-15774IPR002100Transcription factor, MADS-box
PfamPF003191.6E-161259IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-62540IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-64061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MPRRVKRSRV KFIEDERDHS LTFFNRRSRL FKDASELSTL TGARVTVVVE SKNKKVSSFS  60
TPDAGPIVDA FLSEDASTEF NTIKEGKVKS TTLQNESFHL EKSKAVEDNM EENMMQAKDI  120
QETSRMAKYV YGKVEDLNAI ELIEMCSKLS EIEQEIEDRL SINFVRTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G227500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971988.11e-115serum response factor homolog A
TrEMBLK3XPQ91e-113K3XPQ9_SETIT; Uncharacterized protein
STRINGSi003888m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-07AGAMOUS-like 61