PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G249600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 225aa    MW: 24672.9 Da    PI: 9.6908
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G249600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1876129356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+ +++keq + Lee F+ n++++ +++e LA kl+L  rqV vWFqNrRa+ k
  Sevir.5G249600.1.p  76 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTK 129
                         67789***********************************************98 PP
2HD-ZIP_I/II121.15.7e-3976163289
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                         kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr+
  Sevir.5G249600.1.p  76 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRA 163
                         9*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-1851132IPR009057Homeodomain-like
SuperFamilySSF466893.47E-1965132IPR009057Homeodomain-like
PROSITE profilePS5007116.90871131IPR001356Homeobox domain
SMARTSM003899.7E-1673135IPR001356Homeobox domain
CDDcd000864.53E-1574132No hitNo description
PfamPF000468.8E-1676129IPR001356Homeobox domain
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
SMARTSM003407.1E-23131174IPR003106Leucine zipper, homeobox-associated
PfamPF021833.2E-10131164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGSTSPSGLE LTMAVPGLSS SSGSEGYAGN GNGNAMRDLD MNQPASGGEE EEFPMGSVEE  60
DEEERGAGPG GPHRPKKLRL SKEQSRLLEE SFRLNHTLTP KQKEALAVKL KLRPRQVEVW  120
FQNRRARTKL KQTEMECEYL KRCFGSLTEE NRRLQREVEE LRAMRVAPPT VLSPHTRQPL  180
PASALSMCPR CERITAATGA PAARTPRPAA AANPFHPRRP SAAF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G249600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9661900.0EU966190.1 Zea mays clone 292384 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969293.11e-161homeobox-leucine zipper protein HOX3
SwissprotQ0JKX11e-129HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-129HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLK3XLQ01e-160K3XLQ0_SETIT; Uncharacterized protein
STRINGSi002823m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-65homeobox-leucine zipper protein 17