PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G260200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 373aa    MW: 39767.3 Da    PI: 9.4685
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G260200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.22.8e-21230292163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         +ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN +L++e+++  + ++kl++e+
  Sevir.5G260200.1.p 230 DKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENASLRSEISKVAESSQKLRMEN 292
                         689*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.9E-26197IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1705.6E-15227289No hitNo description
SMARTSM003381.2E-19230294IPR004827Basic-leucine zipper domain
PfamPF001706.8E-20231292IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.208232295IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-10234288No hitNo description
CDDcd147022.37E-21235283No hitNo description
PROSITE patternPS000360237252IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGHDEAVVTQ NSVKAPSPPK DQPAMYPCLD WSTMQAYYGP GVFPPTFFSP GIASGHVPPP  60
YMWGPQRPLQ NMPPASFGKP YGAIYPHAGG FLHPFMPLMV NPLSAEPAKS VNSKDNSSNK  120
KLKEIDGTAV SSGSGNSEKT SGDYSLEGSS DRNNHKMSGT PKKRSLDDRT TSGAETCGAS  180
APNDKTGQPG RLATLSNVRI TDTAIKPCVS TGSDFRFSGA QSTEWQAKDD KESKRERRKQ  240
SNRESARRSR LRKQAETEEL ARKVELLTAE NASLRSEISK VAESSQKLRM ENSSLMEKLA  300
DSASEEEQEA AADQQTAAAP PPARVVKNFL SMMDGAGASR GGGGGRRMEH GAPRLRQLLG  360
SGPLAADAVA AS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246252RRSRLRK
2246253RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G260200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969366.10.0G-box-binding factor 3
RefseqXP_022682183.10.0G-box-binding factor 3
TrEMBLA0A368RA980.0A0A368RA98_SETIT; Uncharacterized protein
STRINGSi001929m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.17e-44G-box binding factor 3