PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G269900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 169aa MW: 17191.5 Da PI: 10.429

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G269900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	90.7	1.2e-28	86	141	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrknk 59 l+cprC s++tkfCy+nny++ qPr++C++CrryWt+GGalr v + grr+ + Sevir.5G269900.1.p 86 PLPCPRCGSRETKFCYFNNYNVRQPRHLCRSCRRYWTAGGALRRVASASpGRRRPR 141 679*****************************************987652555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	25.583	87	141	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-26	87	139	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-18	89	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MANLPDADAA GFKLFGKVIQ PPDAHRAAEE GAGAPPPPPP PPQPPTPTPT MAVLPPAPPQ 60 SPPPPPPPLQ LQAAGAGAAA GGTGDPLPCP RCGSRETKFC YFNNYNVRQP RHLCRSCRRY 120 WTAGGALRRV ASASPGRRRP RPTARSAAAI ATASSASAAA AEEGGGER*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G269900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061655	7e-89	BT061655.1 Zea mays full-length cDNA clone ZM_BFb0169J01 mRNA, complete cds.
GenBank	EU954609	7e-89	EU954609.1 Zea mays clone 1473007 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969505.1	1e-112	dof zinc finger protein 5-like
TrEMBL	A0A368R917	1e-111	A0A368R917_SETIT; Uncharacterized protein
STRING	Sb03g030850.1	7e-46	(Sorghum bicolor)
STRING	GRMZM2G327189_P01	1e-45	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14716	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	2e-21	Dof family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G269900.1.p