PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G283200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family RAV
Protein Properties Length: 401aa    MW: 41293.5 Da    PI: 9.7529
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G283200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-1181129155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  Sevir.5G283200.1.p  81 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGETDAARAYDVAAQRFRG 129
                         78****9888.8*********......44**********99*************98 PP
2B398.93e-31216307185
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F++
  Sevir.5G283200.1.p 216 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYR 306
                         89*******************************5556799*************************************************95 PP

                         - CS
                  B3  85 d 85 
                         +
  Sevir.5G283200.1.p 307 S 307
                         4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-1681137IPR016177DNA-binding domain
CDDcd000183.53E-2281137No hitNo description
PfamPF008473.4E-781129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-1982137IPR001471AP2/ERF domain
SMARTSM003802.3E-2582143IPR001471AP2/ERF domain
PROSITE profilePS5103219.61282137IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.0E-39208322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-31214307IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-29214319No hitNo description
PROSITE profilePS5086313.958216325IPR003340B3 DNA binding domain
SMARTSM010191.4E-23216324IPR003340B3 DNA binding domain
PfamPF023625.7E-28216307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDSASSLVDD TSSGGGGGAS TDKLRALAAA AASAGAPLER MGSGASAVVD AAEPGAEADS  60
AAAAAAGAGA GVGVGGKLPS SRYKGVVPQP NGRWGAQIYE RHQRVWLGTF AGETDAARAY  120
DVAAQRFRGR DAVTNFRPLA DADPDAAAEL RFLVSRSKAE VVDMLRKHTY FDELAQNKRA  180
FAAAASAPTP SALANAHSSP SPSPAAAAAA AREHLFDKTV TPSDVGKLNR LVIPKQHAEK  240
HFPLQLPSAG GESKGVLLNF EDAGGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLQAGD  300
VVGFYRSAAA AGADSKLFIA CRLRPNGDVA ALTSPVVEVE PSSAPVAKAV RLFGVDLLSA  360
PAQAPAAAPA EAMAGCKRAR DLAALPQAAF KKQLVELALV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-522103252114B3 domain-containing transcription factor NGA1
5os9_B5e-522103252114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G283200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9695190.0EU969519.1 Zea mays clone 331400 DNA-binding protein RAV1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969625.10.0AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX90.0Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A368RBB80.0A0A368RBB8_SETIT; Uncharacterized protein
STRINGSi004045m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-99related to ABI3/VP1 1