PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G291500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 523aa    MW: 55051 Da    PI: 7.4529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G291500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13374420455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Sevir.5G291500.1.p 374 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 420
                         799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-4085268IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.02E-15373424No hitNo description
Gene3DG3DSA:4.10.280.103.6E-16373423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16373426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-11374420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MSVDCVVGSQ AKSPTRFLGE EEESASRGLV YLSGESVAVG SKQGMAWSET DAALFAAVLG  60
RDAAHHLATT PPHLDGPPAS AAPELQARLQ DLVERGGGVW TYGIFWQESR GAGGRVVLGW  120
GDGHCRDGGA PHDAAAAGEE RSLARKRALL RLHALYGGGD DDEGADYALR LDRVTGAEMY  180
FLASMYFSFP EGAGGPGHAL ASGRHAWAAV DPHPRGAGAA PGWYVRASLA QSAGLRTVVF  240
LPCKGGVLEL GSDVAVRETP EALRAIQSAL AVAPAPREEC MRIFGKDLSP SSRTPRPLTM  300
GLSVTGDNWA PQPGGHATAS TPPDKTEAAK PKPPEPPKSI DFSKAGKPGQ AGGEERRPRK  360
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPKI SKMDKASLLS DAIAYIQELE  420
DRLRGGGGVA PAARAESPAV EVKAMQDEVV LRVTTPLYAH PVSRVFHAIR DAQLSVAASD  480
VAVADDAVTH TLVLRSAGPE QLTAETVLAA MSRGMTSATP SP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26368457282Transcription factor MYC2
5gnj_B2e-26368457282Transcription factor MYC2
5gnj_E2e-26368457282Transcription factor MYC2
5gnj_F2e-26368457282Transcription factor MYC2
5gnj_G2e-26368457282Transcription factor MYC2
5gnj_I2e-26368457282Transcription factor MYC2
5gnj_M2e-26368457282Transcription factor MYC2
5gnj_N2e-26368457282Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355363RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G291500.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9680150.0EU968015.1 Zea mays clone 312846 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682967.10.0LOW QUALITY PROTEIN: transcription factor bHLH13-like
TrEMBLA0A3L6SLM10.0A0A3L6SLM1_PANMI; Transcription factor bHLH13-like
STRINGPavir.J12952.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-52bHLH family protein