PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G297400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 221aa    MW: 23602.4 Da    PI: 7.4541
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G297400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.4e-31135193159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh 
  Sevir.5G297400.1.p 135 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTMYEGVHNHV 193
                         59********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-32122194IPR003657WRKY domain
SuperFamilySSF1182901.83E-27128194IPR003657WRKY domain
PROSITE profilePS5081130.664130195IPR003657WRKY domain
SMARTSM007741.5E-34135194IPR003657WRKY domain
PfamPF031062.3E-24136192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MHMALASCNS LADAVFLDMA YRNPCDGGLA STFYGGAGSP AAAFLRPAFG AAPADLAPQQ  60
RQPDALECLS DDGVSSVVVP GTFGTPPPPP PRMPVVPDAS GYAHARGTAA VAGEGSTPRT  120
TDRIAFRMRS EEEVLDDGYK WRKYGKKSVK NSPNPRNYYR CSTEGCNVKK RVERDKDDPS  180
YVVTMYEGVH NHVSPGTIYY ATQDAASGRF FVAGMHQFGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-23125195777Probable WRKY transcription factor 4
2lex_A4e-23125195777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G297400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969741.11e-163probable WRKY transcription factor 57
TrEMBLA0A368RA451e-161A0A368RA45_SETIT; Uncharacterized protein
STRINGSi004464m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.18e-39WRKY DNA-binding protein 51