PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G300000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 204aa MW: 23853 Da PI: 9.9416

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G300000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.7	1.7e-17	31	108	1	76
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkw 76 +fYn+YA++ GF++rk + ++++ ++e+++r+++Cs+eg+r+ + + +k+r++ra tr+gC+a+l v+ ++ g w Sevir.5G300000.1.p 31 EFYNDYAYHKGFNIRKGRVRYKTGTKEVIWRRLMCSCEGYRSVKYFErMDKKRQPRALTRCGCTARLDVEWSEsIGIW 108 6***************************************998775789999*************987755666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-15	31	108	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MEAGGYVSLE ETKEYKCIVD QTFTREEDFY EFYNDYAYHK GFNIRKGRVR YKTGTKEVIW 60 RRLMCSCEGY RSVKYFERMD KKRQPRALTR CGCTARLDVE WSESIGIWWT MNAKSAFPTE 120 MRTNTHVWTE QMDRYHSLRS KGNRALFKVS RSQGNDIWAF AGSFSAANQP GGTKVLDPVK 180 IVSKGAPRSN KRWKASHEFW ETV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G300000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700767.1	3e-75	protein FAR1-RELATED SEQUENCE 5
TrEMBL	K3YLN5	2e-69	K3YLN5_SETIT; Uncharacterized protein
STRING	Si015159m	4e-70	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-09	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G300000.1.p