PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G304500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 409aa    MW: 45928.6 Da    PI: 10.3265
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G304500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.75.8e-2019117198
                         EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                         ffkvl   +   ++rl +p +f++++            ke s+  tle +sg++W v +  r++ +++++t+GW +Fv+++ L+e +f+vF
  Sevir.5G304500.1.p  19 FFKVL---MGDFKKRLKIPPDFCKHIpweasrkarT-LKEASMAATLEGPSGQTWLVVI--RRSAEGTFFTSGWPKFVRDQALRELEFLVF 103
                         66777...4455668********888***9999954.45689*****************..****************************** PP

                         EE-SSSEE..EEEEE- CS
                  B3  83 kldgrsefelvvkvfr 98 
                         ++dg++ f  + +vf+
  Sevir.5G304500.1.p 104 RYDGDTHF--TAMVFD 117
                         ***99888..666665 PP
2B352.59.1e-17306392598
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         +++ +v  s ++++p  f ++h   ++e ++++l+d+ g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+g  ef  +v+
  Sevir.5G304500.1.p 306 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVGAAEF--RVH 389
                         7788999999*********9995..345679***************4.444455..9***********************997777..999 PP

                         EE- CS
                  B3  96 vfr 98 
                         vfr
  Sevir.5G304500.1.p 390 VFR 392
                         998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2014121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-2015123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.78816119IPR003340B3 DNA binding domain
CDDcd100173.18E-1817117No hitNo description
SMARTSM010191.2E-1019119IPR003340B3 DNA binding domain
PfamPF023622.1E-1719115IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-24295393IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-22295392IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-24300392No hitNo description
SMARTSM010194.9E-11302394IPR003340B3 DNA binding domain
PROSITE profilePS5086314.184302394IPR003340B3 DNA binding domain
PfamPF023622.0E-15304392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MPAAERRSPL AAGERRPHFF KVLMGDFKKR LKIPPDFCKH IPWEASRKAR TLKEASMAAT  60
LEGPSGQTWL VVIRRSAEGT FFTSGWPKFV RDQALRELEF LVFRYDGDTH FTAMVFDTTA  120
CEREDLLLGG DPRRRRESKK RGHAAKGPSR DAKRTRKDSS VGKEMVPYRA TPGDRQLQVA  180
CSNWTPEPAA GAVKTEVEDA DELALCVVIP APTPPPQPQQ DDPAPTRRRG PQPQEDGGAV  240
KTRSIHEHPQ AAAAALAAAA ENIPASVRRY KGYVSRRRPV TGAERQRAME LAYAFRSSLP  300
YCVVRMSTMH VYYSFMMRFP TGFSRQHLPR ERTDVVLRDP GGKAWVVLYI PNTRDRLSRG  360
WCAFARGNCL EEGDYCVFEL VGAAEFRVHV FRVAEPPVPA VRLRERLA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G304500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703067e-91HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969798.10.0B3 domain-containing protein Os01g0723500 isoform X1
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A368RAA90.0A0A368RAA9_SETIT; Uncharacterized protein
STRINGPavir.Eb02930.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-15related to vernalization1 1