PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G352700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 242aa    MW: 24819 Da    PI: 9.5891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G352700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-203283156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++++GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  Sevir.5G352700.1.p 32 PHFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83
                        689*******.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.03E-183290No hitNo description
PfamPF008473.9E-143282IPR001471AP2/ERF domain
PROSITE profilePS5103223.9473390IPR001471AP2/ERF domain
SMARTSM003807.4E-363396IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-223391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-323390IPR001471AP2/ERF domain
PRINTSPR003671.1E-103445IPR001471AP2/ERF domain
PRINTSPR003671.1E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAPRAADKSP VPPATGLGLG VGGGVGGVGM GPHFRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDAAAREF RGAKAKTNFP FASQCPVAAG AGSPSSNSTV DSSGGGSACG  120
VQAPMQAMPL PPALDLDLFH RAAAVTAVSS GGMRFPFKGY PVARPTPHPY FFYEQAAAAA  180
AAAAGYRMLK VAPPPVTVAA VAQSDSDSSS VVDHTPSPPP VTTKKEVSFD LDLNWPPPAE  240
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-213191364ATERF1
3gcc_A2e-213191364ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G352700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7765140.0KF776514.1 Sorghum bicolor genotype Halepense AP2 domain-containing protein (AP37) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970251.11e-172ethylene-responsive transcription factor 4
TrEMBLK3XLF61e-171K3XLF6_SETIT; Uncharacterized protein
STRINGSi002729m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-21erf domain protein 9