PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G359100.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 449aa    MW: 48730.6 Da    PI: 6.8082
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G359100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.51.4e-08165203745
                         HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          rr+++NReAAr+sR+RKk +i++Le    +L++  ++L
  Sevir.5G359100.3.p 165 LRRLAQNREAARKSRLRKKTYIQNLESSRLKLTQLEQEL 203
                         69************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-5159222IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.577161205IPR004827Basic-leucine zipper domain
CDDcd147082.27E-21164215No hitNo description
SuperFamilySSF579597.5E-7165206No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-7166207No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
PfamPF141446.7E-33245320IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MESRRGGSAA AAAAAAAEDA GGAMPSFGPP QHSIHTDMNS MQPSRVADFG ALAQSAGFRI  60
EDLANINTGT LFNLKTNTHT ISNNPLQFGN YGKPISPSHI NTTTAATAAA RIDPQSLEQQ  120
TGAQPNLVAL PTGNIENWGE SAMADSPMTD TSTDPDTDER NQMTLRRLAQ NREAARKSRL  180
RKKTYIQNLE SSRLKLTQLE QELQRARQQG IFISTSGDQP QSTSGNGALA FDMEYARWLE  240
EHNKHVNELR AAVNAHAGDN DLRGIVDSIM AHYDEIFRLK GVAAKADVFH VLSGMWKTPA  300
ERCFMWLGGF RSSELLKLLA GQLEPLTDQQ LVGISNLQQS SQQAEDALSQ GMEALQQSLA  360
ETLASGSLGP AGSSGNVASY MGQMAMAMGK LGTLENFLRQ ADNLRLQTLQ QMQRILTTRQ  420
SARALLAISD YFSRLRALSS LWLARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G359100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3988710.0HQ398871.1 Saccharum hybrid cultivar Q117 bZIP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458658.10.0transcription factor TGAL1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLC5XMK20.0C5XMK2_SORBI; Uncharacterized protein
STRINGSb03g037560.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-141bZIP family protein