PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G362600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 413aa    MW: 43142 Da    PI: 5.4247
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G362600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.59.5e-18241693127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...........tksgy 82 
                         pG+rF Pt +el+v+yL +k+++++l+++ v++  d y  +P++L+  +   +  ++ Fs++ +++a   ++ r              +g+
  Sevir.5G362600.1.p  24 PGVRFAPTGQELIVHYLGRKLRNEPLPTDLVVDGRDSYAEHPKKLD-LI---SPLTFVFSSSCSAQAGRGHRGRLvpvlvagpqmgDGEGR 110
                         9***************************8889999**********8.32...2456777777776665444444348999988877679** PP

                 NAM  83 Wkatgkdkevlsk..kgelvglkktLvfy............kgrapkgektdWvmheyr 127
                         Wka   +k vl    ++e++g k+ L+f+            k  ++k++ t+W m e+ 
  Sevir.5G362600.1.p 111 WKAVEAEKLVLGGadGKEVIGAKRALTFHehshqvdalgkrKRVSSKSKPTKWKMVEFV 169
                         **********987778889**********887777776654345566778*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-1919178IPR003441NAC domain
PROSITE profilePS5100520.17322193IPR003441NAC domain
PfamPF023651.3E-1124168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSEESTAEAP GDAAAYHEEY LGVPGVRFAP TGQELIVHYL GRKLRNEPLP TDLVVDGRDS  60
YAEHPKKLDL ISPLTFVFSS SCSAQAGRGH RGRLVPVLVA GPQMGDGEGR WKAVEAEKLV  120
LGGADGKEVI GAKRALTFHE HSHQVDALGK RKRVSSKSKP TKWKMVEFVS INSSRAARDD  180
TAPDPMLLRA ANPDPAQGDE KEENDDDNGE EEPAPDGGGE SLEKHLPEQR PAGGGGAGAQ  240
GEQQQPPRGG GAGSHGNMLS YRGAKYFVGV DGSNRSGTHR LSVFGSDDHI GAFYGGGAGS  300
HGNRQPATAE APHGQHMAAL PGDDYRGAKY FVGVDASNRS DTNRLSRAGH RQEASGGGAG  360
SSPDEQQQPT PEAPNGGGAA ATGAASQQSD ANLCDWEFCD SAITFADFVG ST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G362600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682895.10.0NAC domain-containing protein 101
TrEMBLK3XSE90.0K3XSE9_SETIT; Uncharacterized protein
STRINGSi004848m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2933733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.29e-11NAC domain containing protein 47