PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G366900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 231aa    MW: 25903 Da    PI: 6.9415
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G366900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.53.7e-2545106259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK+++g+++pr YYrCt++   gCp++k+ve++ ++dp ++ ++Y++eH+++
  Sevir.5G366900.1.p  45 HDGYQWRKYGQKMIRGNTYPRCYYRCTFHqdhGCPATKHVEQTnSQDPPLFRVIYTNEHTCS 106
                         7**************************998999*******975268**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-2630107IPR003657WRKY domain
SuperFamilySSF1182906.41E-2338106IPR003657WRKY domain
SMARTSM007743.4E-3644107IPR003657WRKY domain
PROSITE profilePS5081120.66746108IPR003657WRKY domain
PfamPF031063.0E-2546105IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAGFSGSSNG THKRLLQDCS SYAQEHAKKR VRISTRTEYT YAPYHDGYQW RKYGQKMIRG  60
NTYPRCYYRC TFHQDHGCPA TKHVEQTNSQ DPPLFRVIYT NEHTCSSTHV SDYMASSIHI  120
QQIADASLRK AETEIPSLTH CGAGHGLIKE EKDAIVSSLL TVTNGCDVAK SDVGRAAMQE  180
NTPAPMARNI YEAIPSVSPV QLAPSDELKM DFVEPLESHW FEPLDLGWFI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-1332103269WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00066PBMTransfer from AT1G66600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G366900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972233.11e-176probable WRKY transcription factor 29
TrEMBLK3XS921e-175K3XS92_SETIT; Uncharacterized protein
STRINGSi004791m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.12e-19ABA overly sensitive mutant 3