PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G367100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 126aa    MW: 13841.7 Da    PI: 10.1414
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G367100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.13.9e-09105125222
                         --SS-EEEEEEE--TT-SS-E CS
                WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                         +Dgy+WrKYGqK++++ +f+r
  Sevir.5G367100.1.p 105 KDGYQWRKYGQKKIQNCNFSR 125
                         8***************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-896125IPR003657WRKY domain
SuperFamilySSF1182901.7E-7100125IPR003657WRKY domain
PfamPF031062.0E-6105125IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MAFDPVAKQL SEVLAGGYHR NTQLQALLSR PLDSRGQEVA MEFSQELSRV FAVSMAMLNS  60
NAAAPEVRTG NSFGVSTPVK DQRARSDIGE VVAPSKKEIT PSPHKDGYQW RKYGQKKIQN  120
CNFSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G367100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972234.18e-87WRKY transcription factor WRKY62
TrEMBLK3XPF82e-85K3XPF8_SETIT; Uncharacterized protein
STRINGSi003782m3e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.13e-06WRKY DNA-binding protein 4