PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G367200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 229aa    MW: 24281.2 Da    PI: 6.4355
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G367200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY26.81e-0823612459
                        EEEE-ST.T---EEEEEE-SSS..TTEEEEEEES--SS- CS
                WRKY 24 YYrCtsa.gCpvkkkversaed..pkvveitYegeHnhe 59
                        YYrC  + +C +kkkv++++    p ++e+tY +eH+++
  Sevir.5G367200.1.p 23 YYRCNRHrRCLAKKKVQQQDGSllPPMFEVTYVNEHTCH 61
                        ****9888*********998765578***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.0E-4162IPR003657WRKY domain
PfamPF031061.6E-92261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-82262IPR003657WRKY domain
SuperFamilySSF1182901.44E-72262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVKPNHHPPI HPCTVLMTLA WYYYRCNRHR RCLAKKKVQQ QDGSLLPPMF EVTYVNEHTC  60
HVLRDTDDAA ATMAPPGTTS RHRAGAARSS NGGDLFDLFP HVIGGGGGGG GSAEEENDAI  120
VSCLATVVSG AAPSSWWTPA AEATAGDPAA AFVAPAGRPA SVDGSVADDG AMMMTMVIED  180
TGFSSFCPVE EACQHQLVAN HHRDVHMDVA RLADTVWPQH AGGAWRRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G367200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972234.11e-150WRKY transcription factor WRKY62
TrEMBLK3XPF81e-148K3XPF8_SETIT; Uncharacterized protein
STRINGSi003782m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632