PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G380300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 185aa    MW: 19366.3 Da    PI: 6.6242
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G380300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066109131123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C  Cg  Fs    L  H+r+H
  Sevir.5G380300.1.p 109 HECAVCGLEFSMGQALGGHMRRH 131
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-55885No hitNo description
PfamPF139127.6E-116083IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4926188IPR007087Zinc finger, C2H2
SMARTSM003550.66183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-6107136No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4107136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.2E-11108133IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.217109136IPR007087Zinc finger, C2H2
SMARTSM003550.89109131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MTLTRHEAED RREMEGLRAD AVARLSLSSS PESSSSAAAG GDRPSSSSAA SRKAMAAEGV  60
FECKTCSRRF ASFQALGGHR TSHTRLQARM LSDPAGAAAA AERDRARVHE CAVCGLEFSM  120
GQALGGHMRR HRGEAPPASH DGAAQSGQAM PDLNLPPLED GDGGQDQQQS ADRSSEPQLL  180
NLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G380300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711161e-90EU971116.1 Zea mays clone 357761 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970517.11e-128zinc finger protein ZAT12
TrEMBLK3XMC81e-126K3XMC8_SETIT; Uncharacterized protein
STRINGSi003051m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.14e-22C2H2 family protein