PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G384200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 240aa    MW: 25075.8 Da    PI: 6.5094
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G384200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.76.4e-29136189155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++WtpeLH+rFveav++L G + A+Pk+i++lm+v+gLt+e+v+SHLQkYR+
  Sevir.5G384200.1.p 136 KARMVWTPELHHRFVEAVAHL-GDKGAVPKAIVRLMNVEGLTRENVASHLQKYRI 189
                         68*******************.999*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.201133192IPR017930Myb domain
SuperFamilySSF466894.66E-19134193IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-29135193IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24136189IPR006447Myb domain, plants
PfamPF002497.3E-10138188IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLSPRGGRPH DATARAPSSS SSPPRQHAGM GAGAGGASGR VLEWEAGLPA ASELTPVSHP  60
LITPALAAAF RINIAGGAFA AASPFDDSPL AHDSPTSHLS LSCDEEDDDD EDEEGETEDA  120
AASGSGACRG GRAGKKARMV WTPELHHRFV EAVAHLGDKG AVPKAIVRLM NVEGLTRENV  180
ASHLQKYRIY LKRTRNPAAP QPAPHFPTAY GSPFNLQPPS DPSSRSGYCA FPSRDSEKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-27136192157Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G384200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666592e-89AK066659.1 Oryza sativa Japonica Group cDNA clone:J013068K17, full insert sequence.
GenBankAP0032512e-89AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05.
GenBankAP0149572e-89AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-89CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970554.11e-171transcription factor PCL1
TrEMBLA0A368RD641e-169A0A368RD64_SETIT; Uncharacterized protein
TrEMBLK3XJE31e-168K3XJE3_SETIT; Uncharacterized protein
STRINGSi002016m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.16e-27G2-like family protein