PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G391000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

WOX

Protein Properties

Length: 213aa MW: 24074 Da PI: 8.3453

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G391000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.8	2.4e-20	11	72	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L elF+ r+ps+e++++++++l +++ ++V++WFqN++a+e++ Sevir.5G391000.1.p 11 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISTHLsafgKVESKNVFYWFQNHKARERH 72 568***************99************************************95 PP
2	Wus_type_Homeobox	110.7	7.8e-36	12	73	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + RW+Pt+eQ+k+L+el+++GlrtP++e+iqri+++L+++Gk+e+kNVfyWFQN+kaRer++ Sevir.5G391000.1.p 12 CGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKARERHH 73 78**********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.6E-4	10	77	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-17	12	72	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-12	13	76	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-7	14	71	IPR009057	Homeodomain-like
CDD	cd00086	4.00E-4	14	74	No hit	No description
PROSITE profile	PS50071	10.106	18	73	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0010078	Biological Process	maintenance of root meristem identity
GO:1902459	Biological Process	positive regulation of stem cell population maintenance
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MEALSGRVGV KCGRWNPTAE QVKVLTELFR AGLRTPSTEQ IQRISTHLSA FGKVESKNVF 60 YWFQNHKARE RHHHKKRRRG ASSPDSGSGS GSNEEDAVGR AASHEAVVEP DLVLQPPESK 120 REARSYSHHH RLLTCYVRDV VEQQAAEALW ERPTREVETL ELFPLKSYVD LEAEKVRYVR 180 SSASEQCREF SFFDVAAGRD PPLELRLCSF GP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269\|PubMed:12904206}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G391000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969717	0.0	EU969717.1 Zea mays clone 334641 WUSCHEL-related homeobox 5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970617.1	1e-156	WUSCHEL-related homeobox 9
Swissprot	Q8W0F1	1e-127	WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBL	K3XLX7	1e-155	K3XLX7_SETIT; Uncharacterized protein
STRING	Si002900m	1e-155	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9411	36	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11260.1	2e-34	WUSCHEL related homeobox 5

Link Out ? help Back to Top
Phytozome	Sevir.5G391000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li S, et al. OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development. New Phytol., 2014. 201(1): p. 66-79 [PMID:24020752] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012]