PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G394700.6.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 423aa    MW: 46352.3 Da    PI: 7.3425
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G394700.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.6e-11113142433
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                          k err+++NReAAr+sR+RKka++++Le+
  Sevir.5G394700.6.p 113 AKTERRLAQNREAARKSRLRKKAYVQQLET 142
                         799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.6E-8110186IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.243112156IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.4E-8112156No hitNo description
PfamPF001703.6E-8113143IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.43E-7114157No hitNo description
PROSITE patternPS000360117132IPR004827Basic-leucine zipper domain
PfamPF141442.6E-28195268IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MTDGLCVRYC SSRDFQPAAA AAAYFGFGEL EEALIHGGGG ASANAGGGVD PGVIIKSDAP  60
AQTKPAAAGY LAGAGGGRPP TLEIFPSWPM RHQQQLHSRK QGSTRKDGKL VDAKTERRLA  120
QNREAARKSR LRKKAYVQQL ETSRIRLQQV EHELQRARSQ GLFVGGCSAA GDMSSGAAAF  180
DMEYARWLDD DGKRLAELRG GLQAHLDGNL GLIVEECVQH YDELFQLKAA LAHEDVFHLL  240
TGGWATPAER CFFWMGGFRP SELLKILIPQ LDPLTEQQLL GICNLQQSSE QAEEALAQGL  300
HQLHQSLADT VAAGTLNDGA AAPNYMSLMA VALEKLASLE SFYQQADNLR QQTLHQMRRI  360
LTTRQAARCF LSIGEYYRRL RALSNLWASR PRENFIGTES LSPTATELQV MHQQQQNQFS  420
GF*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G394700.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0369490.0AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682636.10.0transcription factor LG2 isoform X4
SwissprotO490670.0LG2_MAIZE; Transcription factor LG2
TrEMBLA0A368RDG20.0A0A368RDG2_SETIT; Uncharacterized protein
STRINGSi000955m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-134bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]