PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G394700.7.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 511aa MW: 55197 Da PI: 6.8665

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G394700.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.3e-11	201	230	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Sevir.5G394700.7.p 201 AKTERRLAQNREAARKSRLRKKAYVQQLET 230 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.6E-8	198	274	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-7	200	244	No hit	No description
PROSITE profile	PS50217	9.243	200	244	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.6E-8	201	231	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-7	202	245	No hit	No description
PROSITE pattern	PS00036	0	205	220	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.5E-28	283	356	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MTDGLCVRYC SSRDFQPAAA AAAYFGFGEL EEALIHGGGG ASANAGGGVD PGVIIKSDAP 60 AQTKPAAAGY LAGAGGGRPP TLEIFPSWPM RHQQQLHSGN SQSVGSTTDS SSAQNTMSQM 120 ELVSPASPAP RQEVMMVTTD DYSYKPGLAA APAAAPAPAP PSFQQHHPAL PLHLHGGGGG 180 GGDHDKRKQG STRKDGKLVD AKTERRLAQN REAARKSRLR KKAYVQQLET SRIRLQQVEH 240 ELQRARSQGL FVGGCSAAGD MSSGAAAFDM EYARWLDDDG KRLAELRGGL QAHLDGNLGL 300 IVEECVQHYD ELFQLKAALA HEDVFHLLTG GWATPAERCF FWMGGFRPSE LLKILIPQLD 360 PLTEQQLLGI CNLQQSSEQA EEALAQGLHQ LHQSLADTVA AGTLNDGAAA PNYMSLMAVA 420 LEKLASLESF YQQADNLRQQ TLHQMRRILT TRQAARCFLS IGEYYRRLRA LSNLWASRPR 480 ENFIGTESLS PTATELQVMH QQQQNQFSGF *

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MTDGLCVRYC SSRDFQPAAA AAAYFGFGEL EEALIHGGGG ASANAGGGVD PGVIIKSDAP  60
AQTKPAAAGY LAGAGGGRPP TLEIFPSWPM RHQQQLHSGN SQSVGSTTDS SSAQNTMSQM  120
ELVSPASPAP RQEVMMVTTD DYSYKPGLAA APAAAPAPAP PSFQQHHPAL PLHLHGGGGG  180
GGDHDKRKQG STRKDGKLVD AKTERRLAQN REAARKSRLR KKAYVQQLET SRIRLQQVEH  240
ELQRARSQGL FVGGCSAAGD MSSGAAAFDM EYARWLDDDG KRLAELRGGL QAHLDGNLGL  300
IVEECVQHYD ELFQLKAALA HEDVFHLLTG GWATPAERCF FWMGGFRPSE LLKILIPQLD  360
PLTEQQLLGI CNLQQSSEQA EEALAQGLHQ LHQSLADTVA AGTLNDGAAA PNYMSLMAVA  420
LEKLASLESF YQQADNLRQQ TLHQMRRILT TRQAARCFLS IGEYYRRLRA LSNLWASRPR  480
ENFIGTESLS PTATELQVMH QQQQNQFSGF *

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G394700.7.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF036949	0.0	AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682635.1	0.0	transcription factor LG2 isoform X2
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	K3XGD5	0.0	K3XGD5_SETIT; Uncharacterized protein
STRING	Si000955m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-134	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G394700.7.p

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]