PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G414300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 431aa    MW: 44700.8 Da    PI: 8.0119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G414300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-0592114123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cg+ F++      H+r+H
  Sevir.5G414300.1.p  92 FACHVCGRGFNSLKAVDGHMRVH 114
                         78*******************99 PP
2zf-C2H211.60.00083276294119
                         EEETTTTEEESSHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                         y+C+ Cgks+s++  L  H
  Sevir.5G414300.1.p 276 YSCKLCGKSYSSHQGLGGH 294
                         99*********99888666 PP
3zf-C2H214.20.00013335357123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k+F +   L  H+r+H
  Sevir.5G414300.1.p 335 HECQKCHKVFATGVALGGHMRMH 357
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.3E-490114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.89E-590118No hitNo description
PfamPF139125.2E-492114IPR007087Zinc finger, C2H2
SMARTSM003550.005192114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9792119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-8274298No hitNo description
PfamPF139127.8E-5275299IPR007087Zinc finger, C2H2
SMARTSM003550.95276298IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201276303IPR007087Zinc finger, C2H2
PROSITE patternPS000280278298IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-8330357No hitNo description
Gene3DG3DSA:3.30.160.603.0E-4332357IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.803335362IPR007087Zinc finger, C2H2
PfamPF139122.2E-9335358IPR007087Zinc finger, C2H2
SMARTSM003550.024335357IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280337357IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
EGEYVPGGRD ESSDTDGDDD GYRLQRRLEG QLGRGVSWME VAMASGRPVG VPRPLVARSS  60
CESDGTISDD GSNPSADSSA VVSSAEAPAR RFACHVCGRG FNSLKAVDGH MRVHGNVRMA  120
EAAVVGGGWA ATGKRGWTGG KPSVAAVCLN SESTDDHSTA VVVAQPIPMA IAVTSSPSST  180
PVLSSTRTNL SGEESSSSAT AQPMDYEAPA VATVVTGPNN PSTGAVVHHQ QAAPIPAAEQ  240
ARPVHQPAVP PPQARPVHQP AVPLPPASLA QPRRVYSCKL CGKSYSSHQG LGGHAAGHRN  300
RQKEAEAAAA AAEMMMGLGQ DGAAFRRGRR AEEPHECQKC HKVFATGVAL GGHMRMHYTG  360
PPIVHKRNKR RCPAPPPAPA VSEADLRLAL STVTEERRPS PSPAVAAGRV QAPPSKEEEQ  420
GSSSSEGEKQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G414300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682476.10.0replication initiator 1-like
TrEMBLK3XSI60.0K3XSI6_SETIT; Uncharacterized protein
STRINGSi004885m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.11e-12zinc finger of Arabidopsis thaliana 6